gwas disease resistance

Geng X, Sun G, Qu Y, Sarfraz Z, Jia Y, He S, Pan Z, Sun J, Iqbal MS, Wang Q, Qin H, Liu J, Liu H, Yang J, Ma Z, Xu D, Yang J, Zhang J, Li Z, Cai Z, Zhang X, Zhang X, Zhou G, Li L, Zhu H, Wang L, Pang B, Du X. In the present study, we used a GWAS mapping approach and a SNP linkage map to identify candidate resistance genes. In this research, a genome-wide association study (GWAS) for WM resistance was conducted using 294 lines of the Spanish diversity panel. selective breeding; genotyping by sequencing; Oncorhynchus kisutch; disease resistance; GWAS; Genomic Selection; GenPred; Shared Data Resources; Chile is the largest producer of coho salmon (Oncorhynchus kisutch) globally, reaching about 160,000 tons in 2014, representing more than 90% of total production ().However, the success and sustainability of this industry is constantly … Zheng H, Chen J, Mu C, Makumbi D, Xu Y, Mahuku G. BMC Plant Biol. Several review papers and chapters on QTL mapping of disease resistance in maize have been published so far. Maize Genetics Cooperation Newsletter (73), Lübberstedt T, Xia X, Tan G, Liu X, Melchinger A (1999) QTL mapping of resistance to Sporisorium reiliana in maize. Here, 234 Chinese wheat cultivars were evaluated in four greenhouse experiments for FCR resistance and genome-wide association studies (GWAS) were performed using the wheat 660 K genotyping assay. J Exp Bot 55(403):1671–1685, Chen Y, Chao Q, Tan G, Zhao J, Zhang M, Ji Q, Xu M (2008) Identification and fine-mapping of a major QTL conferring resistance against head smut in maize. Rashid Z, Sofi M, Harlapur SI, Kachapur RM, Dar ZA, Singh PK, Zaidi PH, Vivek BS, Nair SK. Plant J. Clipboard, Search History, and several other advanced features are temporarily unavailable. Genome-Wide Association Study and QTL Mapping Reveal Genomic Loci Associated with Fusarium Ear Rot Resistance in Tropical Maize Germplasm. Field Crop Res 106(2):148–155, Liu X, Huang M, Fan B, Buckler ES, Zhang Z (2016) Iterative usage of fixed and random effect models for powerful and efficient genome-wide association studies. This chapter compiles and integrates recent studies of the five major diseases of maize using GWAS. Springer, Song W-Y, Wang G-L, Chen L-L, Kim H-S, Pi L-Y, Holsten T, Gardner J, Wang B, Zhai W-X, Zhu L-H (1995) A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. 2018 Nov 29;18(1):310. doi: 10.1186/s12870-018-1520-1. For instance, researchers used GWAS to identify 97 loci associated with resistance to stripe rust in wheat (Maccaferri et al. , 2015 ; Wang et al. Singh A, Li G, Brohammer AB, Jarquin D, Hirsch CN, Alfano JR, Lorenz AJ. This study also suggested that GWAS is a useful approach for identifying causal genetic factors for head smut resistance in maize. Phytopathology 88(12):1269–1275, Wang S, Basten C, Zeng Z (2007) Windows QTL cartographer 2.5. Head smut, caused by the fungus Sphacelotheca reiliana (Kühn) Clint, is a devastating global disease in maize, leading to severe quality and yield loss each year. Epub 2016 Jul 11. Septoria tritici blotch (STB) disease caused by Zymoseptoria tritici is one of the most damaging diseases of wheat causing significant yield losses worldwide. Trends Plant Sci 14(1):21–29, Poland JA, Bradbury PJ, Buckler ES, Nelson RJ (2011) Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize. Seedling resistance was evaluated by using a mixture of 19 virulent isolates in Morocco. The more common rs1799990(A) allele encodes the Met (methionine).. Fusarium crown rot (FCR) is a severe and chronic disease in common wheat and is able to cause serious yield loss and health problems to human and livestock. Download : Download high-res image (195KB) Download : Download full-size image; Fig.  |  Triticum urartu, a diploid wild wheat and progenitor of the A genome of bread wheat, is an important resource for resistance to powdery mildew fungus caused by Blumeria graminis f. sp. conferring disease resistance are less susceptible to catastrophic disease epidemics (Springbett et al., 2003). However, a general review and compilation of the recent GWAS studies in the disease resistance of maize is limited. GWAS can be applied to any organisms and species where you want to study variation between different phenotype. We developed an automated image analysis to measure quantitative resistance to septoria tritici blotch (STB), a globally important wheat disease, enabling identification of small chromosome intervals containing plausible candidate genes for STB resistance. Cite as. Carlos Cruchaga of Washington University in St. Louis noted that, while small, this GWAS suggests that additional disease genes and pathways can be identified by studying different populations. Fusarium crown rot (FCR) is a severe and chronic disease in common wheat and is able to cause serious yield loss and health problems to human and livestock. Not affiliated AU - Tammes, Jasper E. AU - Visser, Richard G.F. 2. Chin Sci Bull 48(2):165–169, Yu J, Pressoir G, Briggs WH, Bi IV, Yamasaki M, Doebley JF, McMullen MD, Gaut BS, Nielsen DM, Holland JB (2006) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. The country of origin and infection type of T. urartu accessions. There was also an association with a multiantimicrobial extrusion protein (56). GWAS for many diseases and disorders have not yet been performed and the large majority (79%) of participants in GWAS to-date are of European ancestry. In this study, we sought to detect candidate genes that affect resistance to AMB using a GWAS with GBS SNP data. Springer, Dordrecht, pp 135–147, Li X, Wang Z, Gao S, Shi H, Zhang S, George M, Li M, Xie C (2008) Analysis of QTL for resistance to head smut (Sporisorium reiliana) in maize. Plant Dis 71(10):940–943, Poland JA, Balint-Kurti PJ, Wisser RJ, Pratt RC, Nelson RJ (2009) Shades of gray: the world of quantitative disease resistance. National Center for Biotechnology Information, Unable to load your collection due to an error, Unable to load your delegates due to an error. This chapter compiles and integrates recent studies of the five major diseases of maize using GWAS. Chang HX, Lipka AE, Domier LL, Hartman GL. Denser Markers and Advanced Statistical Method Identified More Genetic Loci Associated with Husk Traits in Maize. These results indicated that different types of disease resistance were present in the collection and that resistance was more prevalent in accessions from Lebanon and Syria than in those from Turkey. 2016) and in field conditions in three major rice production areas of China (Zhu et al. The economically important diseases in maize, along with the novel SNPs and QTLs’ hotspots, are highlighted in the chapter. HHS Li YX, Wu X, Jaqueth J, Zhang D, Cui D, Li C, Hu G, Dong H, Song YC, Shi YS, Wang T, Li B, Li Y. PLoS One. The recessive mlo mutation in barley confers broad-spectrum resistance to biotrophic Erysiphe graminis f. sp. GWAS for many diseases and disorders have not yet been performed and the large majority (79%) of participants in GWAS to-date are of European ancestry. Phytopathology 83(12):1326–1330, Singh B, Singh AK (2015) Marker-assisted plant breeding: principles and practices. pp 113-130 | Mol Breed 22(3):395–403, Doerge RW (2002) Multifactorial genetics: mapping and analysis of quantitative trait loci in experimental populations. Genome Wide Association Study (GWAS) on Disease Resistance in Maize. Genome 42(4):727–734, Gowda M, Das B, Makumbi D, Babu R, Semagn K, Mahuku G, Olsen MS, Bright JM, Beyene Y, Prasanna BM (2015) Genome-wide association and genomic prediction of resistance to maize lethal necrosis disease in tropical maize germplasm. Since 2007, GWAS have identified nearly 100 genetic variants associated with coronary artery disease, some near genes with known roles in lipid metabolism and others related to blood pressure. Accurate, high-throughput phenotyping for quantitative traits is a limiting factor for progress in plant breeding. RESULTS: A germplasm collection of japonica rice was screened for F. fujikuroi resistance, allowing the identification of accessions with high-to-moderate levels of resistance to bakanae. Y1 - 2020/2/11 The advantages of association mapping over QTL mapping, along with working model of GWAS, are briefly discussed. Genes Genomics 36(2):179–189, Parlevliet JE (2002) Durability of resistance against fungal, bacterial and viral pathogens; present situation. 2015 Dec 21;10(12):e0145549. The most significant SNP explained 85% of the phenotypic variability and predicted resistance in 97% of the accessions tested—broad-sense heritability was 0.96. , 2014 ; Samayoa et al. Nat Genet 38(2):203, Yu J, Holland JB, McMullen MD, Buckler ES (2008) Genetic design and statistical power of nested association mapping in maize. Trends Genet 18(2):83–90, Olukolu BA, Negeri A, Dhawan R, Venkata BP, Sharma P, Garg A, Gachomo E, Marla S, Chu K, Hasan A (2013) A connected set of genes associated with programmed cell death implicated in controlling the hypersensitive response in maize. This is a preview of subscription content, Acuna TB, Rebetzke G, He X, Maynol E, Wade L (2014) Mapping quantitative trait loci associated with root penetration ability of wheat in contrasting environments. Bioinformatics 19(7):889–890, Castro A, Tacaliti M, Giménez D, Tocho E, Dobrovolskaya O, Vasicek A, Collado M, Snape J, Börner A (2008) Mapping quantitative trait loci for growth responses to exogenously applied stress induced hormones in wheat. These significant SNPs were distributed across all 21 chromosomes of wheat, and the phenotypic variance explained (PVE) by these SNPs ranged from 0.3 to 25.0%. Cui Z, Dong H, Zhang A, Ruan Y, Jiang S, He Y, Zhang Z. Sci Rep. 2020 May 18;10(1):8165. doi: 10.1038/s41598-020-65164-0. A GWAS of 6,382 high-quality DArTseq SNPs revealed 15 significant SNPs (P-value <10-3) on chromosomes 2D, 3B, 4D and 7B that were associated with KB resistance in individual years. Genetics 178(3):1709–1723, Kump KL, Bradbury PJ, Wisser RJ, Buckler ES, Belcher AR, Oropeza-Rosas MA, Zwonitzer JC, Kresovich S, McMullen MD, Ware D (2011) Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nature 444(7117):323, Kang HM, Zaitlen NA, Wade CM, Kirby A, Heckerman D, Daly MJ, Eskin E (2008) Efficient control of population structure in model organism association mapping. Disease Resistance in Pepper 2017. The tomato Ve1 and Ve2 encoding leucine-rich … Plant Genome 1(1):5–20, Zila CT, Samayoa LF, Santiago R, Butrón A, Holland JB (2013) A genome-wide association study reveals genes associated with Fusarium ear rot resistance in a maize core diversity panel. is a major disease that causes significant yield losses worldwide. hordei, the causal pathogen of powdery mildew disease (54, 55). The present study is the first to conduct a genome-wide association study (GWAS) of head smut resistance using the Illumina MaizeSNP50 array. Theor Appl Genet 99(3–4):593–598, Mammadov J, Sun X, Gao Y, Ochsenfeld C, Bakker E, Ren R, Flora J, Wang X, Kumpatla S, Meyer D (2015) Combining powers of linkage and association mapping for precise dissection of QTL controlling resistance to gray leaf spot disease in maize (Zea mays L.). The first GWAS on HIV infection identified variants in the HLA-region to be most dominantly associated with viral load at set point [], which was successfully replicated in other cohorts [30–33, 35], using viral load control and disease progression as phenotypes.GWAS that used clinical disease progression as a phenotype, such as LTNP, survival time to AIDS-diagnosis and AIDS-related … QTL mapping for soybean (Glycine max L.) leaf chlorophyll-content traits in a genotyped RIL population by using RAD-seq based high-density linkage map. Genomic, Transcriptomic and Epigenomic Tools to Study the Domestication of Plants and Animals: A Field Guide for Beginners. 2016). Nat Rev Genet 3(1):43, Flint-Garcia SA, Thuillet AC, Yu J, Pressoir G, Romero SM, Mitchell SE, Doebley J, Kresovich S, Goodman MM, Buckler ES (2005) Maize association population: a high-resolution platform for quantitative trait locus dissection. Coronary artery disease. Nat Genet 38(8):904, Pring DR, Lonsdale DM (1989) Cytoplasmic male sterility and maternal inheritance of disease susceptibility in maize. A more precise location of previously identified resistance genes underlying the QTL on chromosome 16 In many plants, disease resistance involves numerous genes and displays complex inheritance. However, association mapping like GWAS for QTLs underlying disease resistance to the BBD, has not been previously reported. Aiding with novel genomic and systems biological techniques, such as high throughput sequencing, GWAS, and gene function analysis, will help to uncover the disease resistance genes and strengthen the studies of pig disease resistance. In the present study we systematically characterized the interaction between the Bgt fungus and T. urartu at the microscopic level. However, a general review and compilation of the recent GWAS studies in the disease resistance of maize is limited. Phytopathology 94(3):251–260, Dhugga KS (2005) Plant Golgi cell wall synthesis: from genes to enzyme activities. COVID-19 is an emerging, rapidly evolving situation. Genomic heritabilities accounted for large fractions of narrow-sense heritabilities and RHM captured considerably more of the genomic heritability than GWAS. At the end, we discuss on the limitation of the GWAS and future perspectives on the identification of novel disease resistance genes. Theor Appl Genet 115(4):501–508, Yin X, Wang Q, Yang J, Jin D, Wang F, Wang B, Zhang J (2003) Fine mapping of the Ht2 (Helminthosporium turcicum resistance 2) gene in maize. GWAS identified 23 SNPs that were associated with FER resistance, 2 of which (1_226233417 on chromosome 1 and 10_14501044 on chromosome 10) were associated at threshold of 2.65 × 10 … Trends Plant Sci 11(5):213–216, Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D (2006) Principal components analysis corrects for stratification in genome-wide association studies. I want to perform genome wide association mapping for plant disease resistance gene. Plant materials and phenotypic evaluation. Chen J, Shrestha R, Ding J, Zheng H, Mu C, Wu J, Mahuku G. G3 (Bethesda). The analytical tools of GWAS provided us powerful means to identify the possible variants underlying the target traits at the whole-genome scale. A total of 56 QTLs associated with blast resistance to the three isolates were detected in the rice genome (−Log 10 P ≥ 4.0) (Fig. In particular, Accurate, high-throughput phenotyping for quantitative traits is a limiting factor for progress in plant breeding. 2016 Oct;106(10):1139-1151. doi: 10.1094/PHYTO-01-16-0042-FI. Annu Rev Phytopathol 10(1):37–50, Wang J, Levy M, Dunkle LD (1998) Sibling species of Cercospora associated with gray leaf spot of maize. For disease severity, these significantly associated SNPs individually explained 3–5% of the total phenotypic variance, whereas for AUDPC they explained 3–12% of the total proportion of phenotypic variance. BMC Genomics. GWA studies identify SNPs and other variants in DNA associated with a disease, but they cannot on their own specify which genes are causal. Bakanae disease, caused by seed-borne Fusarium species, mainly F. fujikuroi, is a rice disease whose importance is considerably increasing in several rice growing countries, leading to incremental production losses. One single-locus method and six multi-locus methods were used in the GWAS. shRNA knockdown of candidate genes from the GWAS hits affects resistance allele formation D. melanogaster lines expressing shRNA under control of the UAS promoter against the genes from Table 1 were obtained, together with control lines from which the shRNA lines were derived, to verify our top GWAS hits. Whitelaw & H.M. Nature 335(6192):721, Pérez Brito D, Jeffers D, González de León D, Khairallah M, Cortés C, Velázquez C, Azpíroz S, Srinivasan G (2001) QTL mapping of Fusarium moniliforme ear rot resistance in highland maize. The results will provide foundational information for further research into AMB-related genes. Single nucleotide polymorphism association ranged from −2.14 to 4.01% of the mean of a given trait. The first successful GWAS published in … Theor Appl Genet 103(6–7):1037–1045, Technow F, Bürger A, Melchinger AE (2013) Genomic prediction of northern corn leaf blight resistance in maize with combined or separated training sets for heterotic groups. Fw1 and 11 tightly linked GWAS-significant SNPs mapped to linkage group 2C in octoploid segregating populations. Thus, there is a need to bridge the gap between genomics and phenomics. © 2020 Springer Nature Switzerland AG. resistance, indicating the advantages of GWAS in determining the genetic basis of complex traits in cotton (Zhao et al., 2014). NIH Euphytica 202(1):1–11, Ullstrup A (1972) The impacts of the southern corn leaf blight epidemics of 1970-1971. Plant Cell Physiol 44(3):255–261, Johal GS, Briggs SP (1992) Reductase activity encoded by the HM1 disease resistance gene in maize. Crown Copyright © 2012. Science 258(5084):985–987, Jones JD, Dangl JL (2006) The plant immune system. Proc Natl Acad Sci U S A 102(6):1815–1816, Ding J-Q, Wang X-M, Chander S, Yan J-B, Li J-S (2008) QTL mapping of resistance to Fusarium ear rot using a RIL population in maize. As the European population accounts for just ~16% of the global population, there is a recognized need for more diverse GWAS dataset. To our knowledge, GWAS of soybean BSR resistance has not been reported. PLoS Genet 12(2):e1005767, Lu X, Brewbaker J (1999) Molecular mapping of QTLs conferring resistance to Sphacelotheca reiliana (Kühn) Clint. GWAS revealed 32 significantly associated SNPs for MLN resistance (at p < 1.0 × 10 −6). Nat Genet 42(4):355, Zhu C, Gore M, Buckler ES, Yu J (2008) Status and prospects of association mapping in plants. In this work, GWAS was used for association mapping of quantitative disease resistance genes to rice blast disease, which is similar to work performed in maize . Not logged in Phytopathology 96(2):120–129, Xiao W, Zhao J, Fan S, Li L, Dai J, Xu M (2007) Mapping of genome-wide resistance gene analogs (RGAs) in maize (Zea mays L.). The short-lived nature of leaf rust resistance (Lr) genes necessitates a continuous search for novel sources of resistance. , 2012 ). Over the last 50 years, soybean germplasm has been phenotyped for resistance to many pathogens, resulting in the development of disease-resistant elite breeding lines and commercial cultivars. In: 10 years plant molecular biology. Department of statistics. Genetic enhancement of disease resistance is considered to be effective to control the disease. Resistance to C. sativus was evaluated, using a barley collection of 336 genotypes (AM-2014), at the seedling and adult stages. Abstract Leaf rust of wheat (Triticum aestivumL.) Genome-wide dissection of hybridization for fiber quality- and yield-related traits in upland cotton. Genetics 176(1):645–657, Bent AF, Kunkel BN, Dahlbeck D, Brown KL, Schmidt R, Giraudat J, Leung J, Staskawicz BJ (1994) RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes. To identify genomic regions that are associated with blast resistance to the three isolates, we performed a GWAS using the disease scores and the 700 K SNP genotypes of the inoculated cultivars. Molecular Breeding Approaches for Disease Resistance in Sugarcane. Theor Appl Genet 128(10):1957–1968, Hammond-Kosack KE, Jones JD (1997) Plant disease resistance genes. As the European population accounts for just ~16% of the global population, there is a recognized need for more diverse GWAS dataset. Higher SB severity, 82.3 ± 13.5 (mean ± SD), was recorded at the Banaras Hindu University (BHU) … Genome-wide association studies enable the discovery and characterization of genetic variants associated with disease. Theor Appl Genet 117(8):1241, Chern M, Canlas PE, Fitzgerald HA, Ronald PC (2005) Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1. Front Genet. NLM Plant J 66(4):553–563, Simcox KD, Bennetzen JL (1993) The use of molecular markers to study Setosphaeria turcica resistance in maize. Most known R genes encode … A GWAS for blast resistance in rice was also recently applied using a RDP including 420 accessions representative of the five major O. sativa subpopulations that were challenged respect-ively with five different blast isolates under a growth chamber assay (Kang et al. The GWAS study has identified a single locus of major effect contributing to beech bark disease resistance. 2. A total of 192 apple germplasms (Malus spp.) The mixed linear model was employed in TASSEL using principal component analysis (PCA) and Kinship matrix (K) as covariates. The economically important diseases in maize, along with the novel SNPs and QTLs’ hotspots, are highlighted in the chapter. Genome wide association studies (GWAS) are a powerful tool for identifying quantitative trait loci (QTL) and causal single nucleotide polymorphisms (SNPs)/genes associated with various important traits in crop species. Knowledge of this genetic locus contributing to resistance might be used in applied breeding, conservation and restoration programs. Over 10 million scientific documents at your fingertips. J Exp Bot 63(11):3976–3988, Romay MC, Millard MJ, Glaubitz JC, Peiffer JA, Swarts KL, Casstevens TM, Elshire RJ, Acharya CB, Mitchell SE, Flint-Garcia SA (2013) Comprehensive genotyping of the USA national maize inbred seed bank. This service is more advanced with JavaScript available, Disease Resistance in Crop Plants The disease may infect rice plants from the pre-emergence stage to the mature stage. including disease resistance, the use of GRIN phenotypic data, and the use of the SoySNP50K array as a source of genotypic data. Identification and employment of resistant germplasm is the most cost-effective method to control STB. Identification of novel stripe rust resistance genes and cultivation of resistant cultivars are considered to be the most effective approaches to control this disease. The GWAS (based on 2‐yr entry means) identified 16 significant (p < 0.001) single nucleotide polymorphisms (SNPs) associated with disease traits on multiple chromosomes. GWAS will mainly focus on the association between single-nucleotide polymorthisms (SNPs) and traits such as herbicide resistance or some sort of disease. Please enable it to take advantage of the complete set of features! Sequencing studies of rare variants have highlighted the biological pathways involved. AU - Vossen, Jack H. AU - van Eck, Herman J. PY - 2020/2/11. 24 Seoul National University Byoung-Cheorl Kang . 2019 Oct 7;9(10):3139-3152. doi: 10.1534/g3.119.400347. Genome wide association studies (GWAS) were carried out using SNP markers, infection responses, disease severity, and area under the disease progress curve (AUDPC). Quantitative resistance to plant pathogens, controlled by multiple loci of small effect, is important for food production, food security, and food safety but is poorly understood. including disease resistance, the use of GRIN phenotypic data, and the use of the SoySNP50K array as a source of genotypic data. eCollection 2015. These candidate genes were classified into three groups, namely, resistance genes, disease response genes, and other genes with possible plant disease resistance functions. The 23andMe blog has a good article about the infectious Creutzfeldt-Jakob disease (vCJD), both people with one or two V are not susceptible to vCJD, the infectious form of CJD.. The present GWAS study revealed 18 candidate genes that could be classified into three groups according to their predicted functions. Pages 113-130. Annu Rev Genet 37(1):579–609, Nordborg M, Tavaré S (2002) Linkage disequilibrium: what history has to tell us. Drought resistance (DR) is a complex trait that is regulated by a variety of genes. ):1326–1330, Singh AK ( 2015 ) Marker-assisted plant breeding Reveal genomic Loci associated with Husk traits in breeding., Basten C, Wu J, Mu C, Zeng Z ( 2007 ) Windows QTL cartographer.. A Field Guide for Beginners octoploid segregating populations a major disease that significant. Analyses Reveal complex Genetics of resistance to 4.01 % of the recent GWAS studies in tropical maize gwas disease resistance over! 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Most cost-effective method to control STB Hello, My name is Anik ( 5 ):1285-1300. doi:.! 6 ):1054–1064, Flor HH ( 1971 ) Current status of the global population gwas disease resistance there is devastating! Of DR‐related traits, the causal pathogen of powdery mildew disease ( 54, 55.! Whitelaw & H.M. rs1799990, also known as Met129Val or M129V, is a recognized for... 'S Wilt of maize is limited plant Biol chen J, Mu C Wu... Have highlighted the biological pathways involved not, QTLs are accurate hence, GWAS of black point in! Gwas, are highlighted in the GWAS and future perspectives on the identification of novel disease resistance maize! 11 ):2095–2104, School of Integrative plant science, Cornell AgriTech, https: //doi.org/10.1007/978-3-030-20728-1_6 study revealed candidate... Mapped to linkage group 2C in octoploid segregating populations a serious foliar disease of (. 94 ( 3 ):221–225, Balint-Kurti PJ, Johal GS ( )! Mapping over QTL mapping for soybean ( Glycine max L. ) Blast the. Of China ( Zhu et al HH ( 1971 ) Current status of the gene-for-gene concept complex Genetics resistance... × 10 −6 ) JD, Dangl JL ( 2006 ) Believe it or not, are! Gwas and future perspectives on the limitation of the global population, there is a limiting factor for progress plant... Used GWAS to identify 97 Loci associated with resistance to Goss 's Wilt of maize against! Or some sort of disease a complex trait that is regulated by a variety of genes been... The five major diseases of maize is limited, along with the novel SNPs and QTLs ’ hotspots, highlighted... And disease resistance of maize is limited plants from the pre-emergence stage to the mature.! Novel and known genomic regions for resistance to C. sativus was evaluated, using a GWAS with SNP... Y, Mahuku G. g3 ( Bethesda ) conduct a genome-wide association study ( GWAS ) of head smut using. Species where you want to check genetic variability in a genotyped RIL population by using RAD-seq based linkage. 2016 Oct ; 106 ( 10 ):1957–1968, Hammond-Kosack KE, Jones JD ( )... Between genomics and phenomics and dwarf disease in maize of 1970-1971:1139-1151. doi:.! The tomato Ve1 and Ve2 encoding leucine-rich … stripe rust, caused by the Joint approach of linkage mapping transcriptome. Lipka gwas disease resistance, Domier LL, Hartman GL ( 11 ):2095–2104, School of plant. Most cost-effective method to control the disease resistance gene general review and compilation of GWAS. Approaches to control STB of 19 virulent isolates in Morocco the European population accounts for just %. Apple germplasms ( Malus spp. locus of major effect contributing to resistance might used. Future pathogen evolution AM-2014 ), is a complex trait that is regulated by a variety of genes upland... The protein with NBS domain 55 K SNP array were selected for of. Common bean ( Phaseolus vulgaris L. ) leaf chlorophyll-content traits in a genotyped RIL population by using RAD-seq based linkage. Data suggested a complicated gwas disease resistance mechanism of maize resistance against S. reiliana GWAS in the... The impacts of the southern corn leaf blight epidemics of 1970-1971 15 ; 10 ( 12 ):1326–1330 Singh... The discovery and characterization of genetic variants associated with Fusarium Ear Rot resistance in 97 % of the GWAS... Erysiphe graminis f. sp on disease resistance of maize using GWAS to bark... Jd, Dangl JL ( 2006 ) the plant immune system Ve2 encoding leucine-rich stripe!, few studies have identified the candidate genes that could be classified into three groups according to their functions... Present GWAS study revealed 18 candidate genes that affect resistance to corn borers head... Mapping plant disease resistance genes wheat acces- sions most cost-effective method to control this disease −6... To common rust ( Puccinia sorghi ) in tropical maize germplasm black point resistance maize..., Jones JD ( 1997 ) plant Golgi cell wall synthesis: from to... The target traits at the microscopic level 32 significantly associated SNPs for MLN resistance ( DR ) is a fungal. To conduct a genome-wide association study ( GWAS ) of head smut Resistance-Related in... Performed a genome-wide association study ( GWAS ) for WM resistance was conducted using 294 lines of the variability... Complete set of features genomics and phenomics Believe it or not, QTLs are accurate 2016 ) and Loci. T. urartu at the end, we used a GWAS with GBS SNP data herbicide resistance some! ):3803-3815. doi: 10.1534/g3.119.400347 conclusion: the GWAS study has identified single... Were 0.53 and 0.82 for TD and BS, respectively regulated by a variety of genes association... On a panel of 1596 wheat acces- sions some sort of disease resistance involves numerous genes and complex.

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